Symposia & Events

Publications

A list of the publications, reports and manuscripts which have arisen from Strategic Research Fund for the Marine Environment (SRFME) and allied projects to date.

While this listing includes some as yet unpublished manuscripts, it is also an as yet incomplete listing of all the publications which will eventually arise from SRFME. More publications will be produced as SRFME students begin to write up more papers from the research included in their theses (Volume 1, Chapter 2). In addition, those yet-tobe- concluded SRFME Collaborative Projects (Volume 1, Chapter 3) will also give rise to more publications as will the research from the SRFME Core Projects described in Volume 2. This list does not include a significant number of conference presentations and milestone reports which are referred to in the main volumes of the SRFME Final Report.

Publications listed alphabeticaly by lead author. Click letter below to jump to authors on this page starting with that letter.

A-B C D-E F G H I K L M N-P R-S T V W

Anon. (2001). Report of the Joint Venture Management Committee on the Research Portfolio for the Strategic Research Fund for the Marine Environment. CSIRO Marine Research Unpublished Report.

Babcock, R., M. Kleczkowski, M. Vanderklift, M. Haywood, D. Dennis, D. Milton, R. Bustamante, R.L. Little, A.D. McDonald and F. Boschetti (2006). Ningaloo Start-up Projects 2005-06 Financial Year: Activity A: A Demonstration of ELFSim for Evaluation of Line Fishing Management Strategies on the Ningaloo Reef and Activity B: Ecosystem Effects of Recreational Fishing: Ningaloo Underwater Visual Census 2006. CSIRO Marine and Atmospheric Research. 55 pp. Unpublished Report.

Babcock, R.C., J.C. Phillips, M. Lourey and G. Clapin (2007). Increased density, biomass and egg production in an unfished population of Western Rock Lobster (Panulirus cygnus) at Rottnest Island, Western Australia. Marine and Freshwater Research 58:286-292.

Babcock, R.C., J.C. Phillips, M. Lourey and G. Clapin (2007). Increased density, biomass and egg production in an unfished population of Western Rock Lobster (Panulirus cygnus) at Rottnest Island, Western Australia. Marine and Freshwater Research. 58(3): 286-292.

Bamber, R.N. (2005). The Pycnogonids of Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 325-341.

Bamber, R.N. (2005). The tanaidaceans (Arthropoda: Crustacea: Peracarida: Tanaidacea) of Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 613-727.

Barlow, R.G., V. Stuart, V. Lutz, H. Sessions, S. Sathyendranath, T. Platt, M. Kyewalyanga, L. Clementson, M. Fukasawa and S. Watanabe and E. Devred (2007). Seasonal pigment patterns of surface phytoplankton in the subtropical Southern Hemisphere. Deep-Sea Research I 54:1687-1703.

Barton, I.J. and A.F. Pearce (2006). Validation of GLI and other satellite-derived sea surface temperatures using data from the Rottnest Island ferry, Western Australia. Journal of Oceanography 62: 303:310.

Bartsch, I. (2005). The Australian Agauopsis fauna (Halacaridae: Acari), with description of new and known species of Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 343-362.

Bartsch, I. (2005). The rhombognathine fauna of Australia (Rhombognathinae: Halacaridae: Acari) with notes on the fauna of Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 375-397.

Bartsch, I. (2005). Western Australian Werthella (Copidognathinae: Halacaridae: Acari), description of a new and notes on related species. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 363-373.

Berthot A., C. Pattiaratchi, M. Feng, Y. Li and G. Meyers (submitted). Latitudinal response of the Leeuwin Current to inter-annual forcing using SODA re-analysis data. (Submitted to Continental Shelf Research)

Bieler, R., P.M. Mikkelsen and R.S. Prezant (2005). Byssus-attachment by infaunal clams: Seagrass-nestling Venerupis in Esperance Bay, Western Australia (Bivalvia: Veneridae). In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 177-197.

Bieler, R. and L.R.L. Simone (2005). Anatomy and morphology of Stephapoma nucleogranosum Verco, 1904 (Caenogastropoda: Siliquariidae) from Esperance Bay, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 159-175.

Burnett, W., H. Bokuniewicz, J. Cable, M. Charette, E. Kontar, S. Krupa, A. Loveless, W. Moore, J. Oberdorfer, P. Povinec, T. Stieglitz and M. Taniguchi (2006). Quantifying Submarine Groundwater Discharge in the Coastal Zone via Multiple Methods. Science of the Total Environment. 367(2-3): 498-543.

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Cambridge, M.L., J.C. Phillips and T.N. Moore (2005). Nitrogen and phosphorus concentrations in leaf tissue of the seagrasses Posidonia kirkmanii and P. australis from Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 11-19.

Cambridge, M.L., J.R. How, P.S. Lavery and M.A. Vanderklift (2007). Retrospective analysis of epiphyte assemblages in relation to seagrass loss in a eutrophic coastal embayment. Marine Ecology Progress Series 346: 97-107.

Caputi, N., C. Chubb, R. Melville-Smith, A. Pearce and D. Griffin (2003). Review of relationships between life history stages of the western rock lobster, Panulirus cygnus, in Western Australia. Fisheries Research 65: 47-61.

Collier C.J., P.S. Lavery, R.J. Masini and P.J. Ralph (2007). Morphological, growth and meadow characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series. 337:103-115.

Collier C.J., P.S. Lavery, R.J. Masini and P.J. Ralph (2008). Physiological characteristics of the seagrass Posidonia sinuosa along a depth-related gradient of light availability. Marine Ecology Progress Series 353:65-79.

Collier C.J., P.S. Lavery, P.J. Ralph and R.J. Masini (In press). Shade-induced response and recovery of the seagrass Posidonia sinuosa Journal Experimental Marine Biology and Ecology.

Condie, S.A., J. Waring, J.V. Mansbridge and M.L. Cahill (2005). Marine connectivity patterns around the Australian continent. Environmental Modelling and Software 20: 1149-1157.

Connell, S.D. and M.A. Vanderklift (2007). Negative interactions: The influence of predators and herbivores on prey and ecological systems. In: S.D. Connell (Ed.) Marine Ecology. Oxford University Press.

Craig, P.D. (2005). Modeling turbulence generation by breaking waves. In: H. Baumert, J. Simpson and J. Sundermann (eds.) Marine Turbulence – Theories, Observation and Models. Cambridge University Press (Cambridge, UK) pp 273-276.

Crawley, K.R. and G.A. Hyndes (2007). The role of different types of detached macrophytes in the food and habitat choice of a surf-zone inhabiting amphipod. Marine Biology 151: 1433-1443.

Crawley, K.R., G.A. Hyndes and M.A. Vanderklift (2007). Variation among diets in discrimination of δ13C and δ15N in the amphipod Allorchestes compressa. Journal of Experimental Marine Biology and Ecology 349: 370-377.

Crawley, K.R., G.A. Hyndes, and M. Vanderklift (2007). Discrimination of d13C and d15N in the amphipod Allorchestes compressa. Journal of Experimental Marine Biology and Ecology 349: 370–377.

Crawley, K.R., G.A. Hyndes, M.A. Vanderklift, A.T. Revill, P.D. Nichols (In press). Allochthonous brown algae are the primary food source for consumers in a temperate, coastal environment. Marine Ecology Progress Series.

Crawley, K.R., G.A. Hyndes and S.G. Ayvazian (2006). The influence of different volumes and types of detached macrophytes on fish community structure in surf zones of sandy beaches. Marine Ecology Progress Series 307: 233-246.

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DiFiore, P. J., D. M. Sigman, T.W. Trull, M. J. Lourey, K. Karsh, G. Cane, and R. Ho (2006). Nitrogen isotope constraints on subantarctic biogeochemistry. Journal of Geophysical Research 111: C08016.

Edgar, G., N. Barrett and K. Bancroft (2003). Baseline surveys for ecosystem monitoring within the Jurien Bay Marine Park 1999-2003. Tasmanian Aquaculture and Fisheries Institute Internal Report, Hobart, 29 pp. Unpublished Report.

Edgar, G.J., G.R. Russ and R.C. Babcock (2007). Marine protected areas. In: S.D. Connell and B.M. Gillanders (Eds.) Marine Ecology. Oxford University Press. pp 534-565.

England, P.R., J. Phillips, J.R. Waring, G. Symonds and R. Babcock (2008). Modelling wave-induced disturbance in highly biodiverse marine macroalgal communities: support for the Intermediate Disturbance Hypothesis. Marine and Freshwater Research 59: 515–520.

Erseus, C. and H. Wang (2005). Marine Tubificidae (Annelida: Clitellata) of the Esperence area, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 399-424.

Evans, M., A. Loveless and C. Oldham (in prep.) Estimation of residence time of groundwater in the marine-groundwater mixing zone using field data and modelling.

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Fandry, C.B., D. Slawinski and L. Pender (2006). Two Rocks moorings data report. CSIRO Marine and Atmospheric Research Paper 005. 26 pp. Unpublished Report.

Fearns, P.R., L. Twomey, U. Zakiyah, S. Helleren, W. Vincent and M.J. Lynch (2007). The Hillarys Transect (3): Optical and chlorophyll relationships across the continental shelf off Perth. Continental Shelf Research 27(12): 1719-1746.

Feng, M. and K. Wild-Allen (in press). The Leeuwin Current. In: K-K. Liu, L. Atkinson, R. Quinones and L. Talaue-McManus (Eds.) Carbon and Nutrient Fluxes in Continental Margins: A Global Synthesis.

Feng, M., A.M. Waite and P.A. Thompson (submitted). Climate variability and ocean production in the Leeuwin Current system off the west coast of Western Australia. Journal of the Royal Society of Western Australia.

Feng, M. (2004). Water mass formation in the South Indian Ocean by air-sea fluxes. Journal of Tropical Oceanography 23(6): 16-21.

Feng M., Y. Li and G. Meyers (2004). Multidecadal variations of Fremantle sea level: footprint of climate variability in the tropical Pacific. Geophysical Research Letters 31: L16302.

Feng, M., R. Lukas, P. Hacker, A. J. Plueddemann and R. A. Weller (2005). Upper ocean momentum balances in the western equatorial Pacific on the intraseasonal time scale. Deep-sea Research I 52(5): 749-765.

Feng, M., L. Majewski, C. Fandry and A. Waite (2007). Characteristics of two counter-rotating eddies in the Leeuwin Current system off the Western Australian coast. Deep-Sea Research II 54: 961-980.

Feng, M. and G. Meyers (2003). Interannual variability in the tropical Indian Ocean: a twoyear time scale of the IOD. Deep-Sea Research II 50: 2263-2284.

Feng, M., G. Meyer and J. Church (2005). How our sea temperature has changed? Indian Ocean Climate Initiative Note Series 3.

Feng, M., G. Meyers, A. Pearce & S. Wijffels (2003). Annual and interannual variations of the Leeuwin Current at 32°S. Journal of Geophysical Research 108(C11): 3355.

Feng, M. and S. Wijffels (2002). Intraseasonal variability in the South Equatorial Current of the East Indian Ocean. Journal of Physical Oceanography 32: 265-277.

Feng, M., S. Wijffels, S. Godfrey and G. Meyers (2005). Do eddies play a role in the momentum balance of the Leeuwin Current? Journal of Physical Oceanography 35(6): 964-975.

Fromont, J., C. Hass, L. Marsh, G. Moore, M. Salotti, M. Titelius and C. Whisson (2006). Biodiversity of Marine Fauna on the Central West Coast. Final Milestone Report to the Strategic Research Fund for the Marine Environment (SRFME), 85pp. Unpublished Report.

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García-Martínez, M., J. Kuo, K. Kilminster, D. Walker, R. Rosselló-Mora, C.M. Duarte (2005). Microbial colonization in the seagrass Posidonia spp. Roots. Marine Biology Research 1: 388 – 395.

Gartner, A., P.S. Lavery, K. McMahon, A. Brearley and H. Barwick (submitted). Light reductions drive faunal changes in Amphibolis griffithii seagrass habitat (submitted to Marine Ecology Progress Series)

Gaughan, D.J. (2007). Potential mechanisms of influence of the Leeuwin Current eddy system on teleost recruitment to the Western Australian continental shelf. Deep Sea Research II 54: 1129-1140.

Gaughan, D.J., A.F. Pearce and P. Lewis (submitted). Influences on the seasonal variability of chaetognaths and siphonophores on the continental shelf off Perth, Western Australia. (Submitted to Estuarine, Coastal and Shelf Science)

Gaughan, D.J., A.F. Pearce and P. Lewis (submitted). The Hillarys Transect: influences on the dominant macrozooplankton and spawning of Sardinops sagax on the continental shelf off Perth, Western Australia. Estuarine, Coastal and Shelf Science.

Goldberg, N. I. and G.A Kendrick (2007). Chapter 3: Recruitment ecology of marine macroalgae In: Connell, S. and Gillanders, B. (eds) Marine Ecology. Oxford University Press.

Goldberg, N.A. (2005). Temporal variation in subtidal macroalgal assemblages at Black Island, Western Australia. Journal of the Royal Society of Western Australia 88: 65-71.

Goldberg, N.A. (2006). Age estimates and description of rhodoliths from Esperance Bay, Western Australia. Journal of the Marine Biological Association of the United Kingdom 86: 1291-1296.

Goldberg, N.A. (2006). Colonization of subtidal macroalgae in a fucalean-dominated algal assemblage, southwestern Australia. Hydrobiologia 575: 423-432.

Goldberg, N.A. and G. Collings (2006) Macroalgae. In: S. McClatchie, J. Middleton, C. Pattiaratchi and G. Kendrick (eds.) The South-west marine region: ecosystems and key species groups. National Oceans Office.

Goldberg, N.A. and J.M. Huisman (2004). Sargassum kendrickii (Fucales, Phaeophyceae) a new species of subgenus Phyllotrichia from southern Australia, Botanica Marina 47: 424-430.

Goldberg, N.A. and J.M. Huisman (2005). First record of tetrasporangia in Herposiphoniella plurisegmenta Wormersley (Rhodomelaceae: Rhodophyta). In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 21-23.

Goldberg, N.A. and G.A. Kendrick (2004). Effects of island groups, depth, and exposure to ocean waves on subtidal macroalgal assemblages in the Recherche Archipelago, Western Australia. Journal of Phycology 40: 631-641.

Goldberg, N.A. and G.A. Kendrick (2005). A catalogue of the marine macroalgae found in the western islands of the Recherche Archipelago, Western Australia, with notes on their distribution in relation to island location, depth and exposure to wave energy. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 25-89.

Goldberg, N.A. and G.A. Kendrick (2007) Dispersal and recruitment ecology of macroalgae. In: Connell, S.D. and Gillanders, B. M. (eds) Marine Ecology.

Goldberg, N.A., G.A. Kendrick and J.N. Heine (2004). Highway or country road: Algal recruitment with distance from an island reef. Journal of the Marine Biological Association of the United Kingdom 84: 879-882.

Goldberg, N.A., G.A. Kendrick and D.I. Walker (2006). Do surrogates describe patterns in marine macroalgal diversity in the Recherche Archipelago, temperate Australia? Aquatic Conservation: Marine and Freshwater Ecosystems 16: 313-327.

Greenwood, J. and K. Soetaert (2008). Interannual variability in the seasonal cycle of chlorophyll in the Leeuwin Current off the southwest Western Australian coast. Journal of Marine Research 66(3): 373-390.

Greenwood, J., M. Feng and A. Waite (2007). A one-dimensional simulation of biological production in two contrasting mesoscale eddies in the south eastern Indian Ocean. Deep-Sea Research II 54(8-10): 1029-1044. (NOTE CHANGES)

Greenwood, J.E., V.W. Truesdale and A. Rendell (2005). Toward an Understanding of Biogenic-silica Dissolution in Seawater – An Initial Rate Approach Applied between 40 and 90 °C. Aquatic Geochemistry 11: 1-20.

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Hyndes, G. and Hanson, C. (2009). Ecological Interactions in Coastal Marine Ecosystems: Trophodynamics. Final report on the outcomes from a Strategic Research Fund for the Marine Environment (SRFME) collaborative project. Centre for Marine Ecosystems Research, Edith Cowan University, Joondalup,
Western Australia. [download PDF 5.3 Mb]

Hanson, C., S. Pesant, A.M. Waite and C. Pattiaratchi (2007). Assessing the magnitude and significance of deep chlorophyll maxima of the coastal eastern Indian Ocean. Deep Sea Research II 54: 884–901

Hanson, C. E., A. M. Waite, P. A. Thompson and C. Pattiaratchi (2007) Phytoplankton community structure and nitrogen nutrition in Leeuwin Current and coastal waters off the Gascoyne region of Western Australia. Deep-Sea Research II 54(8-10): 902-924.

Heagney, E.C., T.P. Lynch, R.C. Babcock and I.M. Suthers (2007) Pelagic fish assemblages assessed using mid-water baited video: standardising fish counts using bait plume size. Marine Ecology Progress Series 350: 255-266.

Hickman, C.S. (2005). Seagrass fauna of the temperate southern coast of Australia I: The cantharidine trochid gastropods. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 199-220.

Hickman, C.S. (2005). Seagrass fauna of the temperate southern coast of Australia II: The limpets Naccula parva and Asteracmea stowae. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western
Australian Museum, Perth. p. 221-233.

Holl, C. M., A. M. Waite, S. Pesant, P. A. Thompson and J. P. Montoya (2007) Unicellular diazotrophy as a source of nitrogen to Leeuwin Current coastal eddies. Deep-Sea Research II 54(8-10): 1045-1054.

Huisman J.M., J. C. Phillips and D.W. Freshwater (in press). Rediscovery of Gelidiella ramellosa (Kützing) Feldmann et Hamel from near the type locality in Western Australia. Cryptogamie Algologie.

Huisman, J, J. Phillips and C. Parker C. (2006). Marine Plants of the Perth Region. 72pp. Department of Environment and Conservation, Perth.

Hutchins, J.B. (2005). Checklist of marine fishes of the Recherche Archipelago and adjacent mainland waters. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 425-449.

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Ince, R., G.A. Hyndes, P.S. Lavery and M.A. Vanderklift (2007). Marine macrophytes directly enhance abundances of sandy beach fauna through provision of food and habitat. Estuarine, Coastal and Shelf Science 74: 77-86.

Ingole, B. and J.A. Koslow. (2005). Deep-sea ecosystems of the Indian Ocean. Indian Journal of Marine Sciences 34: 27-34.

Irvine, T.R. and J.K. Keesing (2007). International collaboration in science, conservation and sustainable tourism of whale sharks. In: T.R. Irvine and J.K. Keesing (Eds.) Whale Sharks: Science, Conservation and Management. Proceedings of the First International Whale Shark Conference, 9-12 May 2005 Australia. Fisheries Research 84(1): 1-3.

Irvine, T.R. and J.K. Keesing (Eds.) (2007). The First International Whale Shark Conference: Promoting International Collaboration in Whale Shark Conservation, Science and Management. Conference Overview, Abstracts and Supplementary Proceedings. CSIRO Marine and Atmospheric Research, Australia. 98p.

Irvine, T.R. and J.K. Keesing (Eds.) (2007). Whale Sharks: Science, Conservation and Management. Proceedings of the First International Whale Shark Conference, 9-12 May 2005 Australia. Fisheries Research 84(1) special issue.

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Keesing, J.K. (2006). Ecology of Heliocidaris erythrogramma. In: J.M. Lawrence (ed.) Edible Sea Urchins: Biology and Ecology (Second Edition) Developments in Aquaculture and Fisheries Science 37: 339-351.

Keesing, J.K. and J.N. Heine (Eds.) (2005). Strategic Research Fund for the Marine Environment (SRFME): Interim Final Report. 385 pp. Strategic Research Fund for the Marine Environment, CSIRO, Australia.

Keesing J.K, J.N. Heine, R.C. Babcock, P.D. Craig, and J.A. Koslow (2006). Strategic Research Fund for the Marine Environment Final Report. Volume 2: The SRFME core projects. Strategic Research Fund for the Marine Environment, CSIRO, Australia. 266p.

Keesing J.K. and J.N. Heine (2006). Strategic Research Fund for the Marine Environment Final Report. Volume 1: The SRFME initiative and collaborative linkages program. Strategic Research Fund for the Marine Environment, CSIRO, Australia. 264p.

Keesing, J.K., J.N. Heine and D. Michel (2006). Strategic Research Fund for the Marine Environment (SRFME) Final Report. Concise Summary. Strategic Research Fund for the Marine Environment, CSIRO, Australia. 36p

Keesing, J. and T. Irvine. (2005). Coastal biodiversity in the Indian Ocean: The known, the unknown and the unknowable. Indian Jour. Mar. Sci. 34(1): 11-26.

Kendrick, G, N.A. Goldberg, E.S. Harvey and J. McDonald (in press). Historical and contemporary influence of the Leeuwin Current to the marine biota of the Southern Western Australian Continental Shelf and the Recherche Archipelago. J. Roy. Soc. W.A.

Kendrick, G.A., E. Harvey, J. McDonald, F. Wells and D. Walker (2005). Introduction to the marine biology of the Esperance region of Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia.
Western Australian Museum, Perth. p. 1-9.

Kendrick, G. A., E.S. Harvey, T. Wernberg, N. Harman and N. Goldberg (2003). The role of disturbance in maintaining diversity of benthic macroalgal assemblages in southwestern Australia. The Japanese Journal of Phycology 51: 5-9.

Kilminster, K., D.I. Walker, P.A. Thompson and J.A. Raven (2008). Changes in growth, internode-distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology Progress Series 361: 83-91.

Kilminster K.L., D.I. Walker, P.A. Thompson and J.A. Raven J.A. (2006). Limited nutritional benefit of the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine, Coastal and Shelf Science 68: 675-685.

Kleczkowski, M., R.C. Babcock and G. Clapin (2008). Density and size of reef fishes in and around a temperate marine reserve. Journal of Marine and Freshwater Research. 59:165-176.

Klonowski, W. (2003). Hyperspectral remote sensing of Western Australian coastal waters. The International Society for Optical Engineering 5515: 201-210.

Klonowski, W.M., P.R. Fearns and M.J. Lynch (2007). Mapping key benthic cover types from hyperspectral imagery. Journal of Applied Remote Sensing. 1: 011505.

Kohn, A.J. and A.M. Blahm (2005). Anthropogenic effects on marine invertebrate diversity and abundance: Intertidal infauna along an environmental gradient at Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 123-145.

Kohn, A.J., K.M. Curran and B.J. Mathis (2005). Diets of the predatory gastropods Cominella and Conus at Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 235-243.

Koh-Siang, T. (2005) Notes on the endemic southern Australian corallivorous gastropod Coralliophila mira (Neogastropoda: Coralliophilidae). In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 245-260.

Koslow, J.A., S. Pesant, M. Feng, A. Pearce, P. Fearns, T. Moore, R. Matear and A. Waite (2008). The effect of the Leeuwin Current on phytoplankton biomass and production off Southwestern Australia. Journal of Geophysical Research. 113: C07050.

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Langlois, T.J., M.J. Anderson and R.C. Babcock (2006) Inconsistent effects of reefs on different size classes of macrofauna in adjacent sand habitats. Journal of Experimental Marine Biology and Ecology 334: 269–282.

Langlois, T.J., M.J. Anderson, R.C. Babcock and S. Kato (2006) Marine reserves demonstrate trophic interactions across habitats. Oecologia 147: 134-140.

Lavery P.S., K. McMahon, M. Mulligan and A. Tennyson (submitted). Interactive effects of timing, intensity and duration of light reduction on Amphibolis griffithii. (submitted to Marine Ecology Progress Series)

Li, Y. and M. Feng (in prep.). Seasonal Variations of the linkage between Fremantle Sea Level and Indo-Pacific Sea Surface Temperature in Southern Hemisphere. (Intended for Journal of Climate).

Liu, Y., M. Feng, J. Church, and D. Wang (2005). Effect of Salinity on Estimating Geostrophic Transport of the Indonesian Throughflow along the IX1 XBT section. Journal of Oceanography 61(4): 795-801.

Lourey, M.J., J.R. Dunn and J. Waring (2006). A mixed-layer nutrient climatology of Leeuwin Current and Western Australian shelf waters: seasonal nutrient dynamics and biomass. Journal of Marine Systems 59: 25-51.

Loveless, A. and Moore (in prep.). Scales and Assumptions of the Radium Technique for estimating Submarine Groundwater Discharge.

Loveless, A. and C.E. Oldham (in prep.). Short-lived radium isotopes and HAMSOM surface water modelling reveal significant episodes of contaminant transport in a semi-enclosed marine basin.

Loveless, A. and C.E. Oldham (submitted). Biogeochemical reactions control groundwater DIN concentrations in coastal permeable sediments. (Submitted to Biogeochemistry)

Loveless, A., C. Oldham and G. Hancock (in prep.). Radium isotopes reveal a bottom end estimate of groundwater volume flux and heterogeneic patterns of discharge in a complex semi-enclosed coastal basin.

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Mackey, P., C.J. Collier and P.S. Lavery (in press). The effects of reduced light availability in Amphibolis griffithii ecosystems. Marine Ecology Progress Series. Majewski, L.J. (in prep.). Remote sensing of phytoplankton production at the Abrolhos Islands, Western Australia.

Mackey P., C.A. Collier and P.S. Lavery (2007). Effects of experimental reduction of light availability on the seagrass Amphibolis griffithii. Marine Ecology Progress Series 342:117-138

MacArthur, L.D., R.C. Babcock, and G.A. Hyndes, G. A. (2008). Movements of the western rock lobster (Panulirus cygnus) within shallow coastal waters using acoustic telemetry. Marine and Freshwater Research 59: 603-613.

MacArthur, L.D., G.A. Hyndes and R.C. Babcock (in press). Western rock lobster in ecosystem processes of south-western Australia. Final Report to Department of Environment and Water Resources. Report No 2007 – 12. 30pp.

MacArthur L.D., G.A. Hyndes, R.C. Babcock and M.A. Vanderklift (In press). Nocturnally active western rock lobsters, Panulirus cygnus, forage close to shallow coastal reefs. Aquatic Biology.

Majewski, L.J. and S. Pesant (in prep.). Structure and dynamics of the pelagic ecosystem along an onshore-offshore transect off southwestern Western Australia, 2002-2004: primary production models and validation of remote sensing algorithms.

Mathis, B.J., A.J. Kohn, and N.A. Goldberg (2005). Rhodoliths: The inside story. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 147-157.

McAtee, B.K., A.F. Pearce, M.J. Lynch, J. Davies, M. Boterhoven and B.J. Osborne (2007). The Hillarys Transect (2): Validation of satellite-derived sea surface temperature in the Indian Ocean off Perth, Western Australia. Continental Shelf Research 27 (12): 1702-1718.

McDonald, J.I. (2004). The invasive pest species Ciona intestinalis (Linnaeus, 1767) reported in a harbour in southern Western Australia. Marine Pollution Bulletin 49: 868-870.

McDonald, J.I. (2005). Solitary Ascidiacea from shallow waters of the Archipelago of the Recherche, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 451-464.

McDonald. J.I., J. Fromont and G. Kendrick (2005). Sponge and Ascidian Communities of the Recherche Archipelago. Final Report to CSIRO Strategic Research Fund for the Marine Environment. Unpublished Report.

McDonald, J.I. and L. Marsh (2005). Asteroidea from shallow waters of the Archipelago of the Recherche, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 463-475.

Mislan, K.A.S. and R.C. Babcock (2008). Survival and behaviour of juvenile red rock lobster, Jasus edwardsii, on rocky reefs with varying predation pressure and habitat complexity. Marine and Freshwater Research. 59:246-253

Moore, T.N., M.L. Cambridge and P.G. Fairweather (2005) Variability of leaf morphology and growth in Posidonia kirkmanii growing in a spatially structured multispecies mosaic. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 91-99.

Moore II, T.S., R.J. Matear, J. Marra and L. Clementson (2007). Phytoplankton variability off the Western Australian Coast: Mesoscale eddies and their role in cross-shelf transport. Deep Sea Research II 54: 943-960.

Mortimer, N., R. Kloser and T. Koslow (2005). High frequency biophysical oceanography in Western Australia. Acoustics 2005, Proceedings of the Annual Conference of the Australian Acoustical
Society. pp 411-414.

Muhling, B.A, L.E. Beckley, J.A. Koslow and A.F. Pearce (2008). Larval fish assemblages and water mass structure off the oligotrophic south-western Australian coast. Fisheries Oceanography. 17(1): 16 – 31.

Muhling, B.A. and L.E. Beckley (2007). Seasonal variation in horizontal and vertical structure of larval fish assemblages off south-western Australia, with implications for larval transport. Journal of Plankton Research. 29(11): 967-983.

Muhling, B.A., L.E. Beckley and M.P. Olivar (2007). Ichthyoplankton assemblage structure in two meso-scale Leeuwin Current eddies. Deep Sea Research II 54: 1113–1128.

Muhling, B.A., L.E. Beckley, D.J. Gaughan, C.M. Jones, A.G. Miskiewicz and S.A. Hesp (2008). Spawning, larval abundance and growth rate of Sardinops sagax off south-western Australia: influence of an anomalous eastern boundary current. Marine Ecology Progress Series 364:157-167.

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Nichols, P.D., K.T. Danaher and J.A. Koslow (2003). Occurrence of high levels of tetracosahexaenoic acid in the jellyfish Aurelia sp. Lipids 38: 1207-1210.

Paterson, H. L. and B. Knott (in prep.). The role of mixotrophy/ autotrophy ratio in contrasting inshore/ offshore environments: in the Indian Ocean off south Western Australia. (Intended for Journal of Plankton Research)

Paterson, H. L., B. Knott and A. Waite (2007). Microzooplankton community structure, and herbivory on phytoplankton, in an eddy pair in the Indian Ocean off Western Australia. Deep Sea Research II 54: 1076-1093.

Paterson, H. L. and J.A. Koslow (in prep.). Microzooplankton: Biomass, abundance and composition covering lagoon, shelf and shelf break (1000 m deep) waters of temperate south western Australia, 2002 to 2004. (Intended for Journal of Plankton Research)

Paterson, H. L., S. Pesant, P. Clode, B. Knott and A. Waite (2007). Systematics of a rare radiolarian - Coelodiceras spinosum Haecker (Sarcodina: Actinopoda: Phaeodaria: Coelodendridae). Deep Sea Research II 54: 1094-1102.

Paterson, H. L., M. Feng, A.M. Waite, D. Gomis, L.E. Beckley, D. Holliday, and P.A. Thompson (2008). Physical and chemical signatures of a developing anti-cyclonic eddy in the Leeuwin Current, Eastern Indian Ocean. Journal of Geophysical Research 113: C07049.

Pearce, A.F., S. Buchan, T. Chiffings, N. D’Adamo, C. Fandry, P. Fearns, D. Mills, R. Phillips and C. Simpson (2003). A review of the oceanography of the Dampier Archipelago, Western Australia. In: F.E. Wells, D.I. Walker and D.S. Jones. The Marine Flora And Fauna Of Dampier, Western Australia. Western Australian Museum, Perth. pp 13-50

Pearce, A., F. Faskel and G. Hyndes (2006). Nearshore sea temperature variability off Rottnest Island (Western Australia) derived from satellite data. International Journal of Remote Sensing 27(12), 2503-2518.

Pearce, A. and M. Feng (2007). Evidence for global warming on the Western Australian continental shelf. Marine and Freshwater Research 58: 914-920.

Pearce, A.F., M.J. Lynch and C.E. Hanson (2006). The Hillarys Transec (1): seasonal and cross-shelf variability of physical and chemical water properties off Perth, Western Australia, 1996 – 1998. Continental Shelf Research 26: 1689-1729.

Phillips, J.C. and J.M. Huisman (in press). Influence of the Leeuwin Current on the marine flora of the Houtman Abrolhos. Journal of the Royal Society of Western Australia.

Phillips, H.E., S.E. Wijffels and M. Feng (2005). Interannual variability in the freshwater content of the Indonesian-Australian Basin. Geophysical Research Letters 32 (3): L03603 2005.

Phillips, J.C. (2005). Use of C:N ratios to assess the nutrient status of macroalgae growing at different depths in the Esperance region, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 101-108.

Poloczanska, E.S., R.C. Babcock, A.J. Butler, A.J. Hobday, O. Hoegh-Guldberg, T.J. Kunz, R. Matear, D. Milton, T.A. Okey and A.J. Richardson (2007). Climate change and Australian Marine Life. In: R.N. Gibson, R.J.A. Atkinson and J.D.M Gordon (Eds.) Oceanography and Marine Biology: An Annual Review. Volume 45. pp. 407-478.

Prado P., C.J. Collier and P.S. Lavery (2008). Within-shoot and among-shoot 13C and 15N translocation in two Posidonia species from Western Australia. Marine Ecology Progress Series 361: 69-82.

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Raven, J.A., K. Brown, M. Mackay, J. Beardall, M. Giordano, E. Granum, R.C. Leegood, K. Kilminster and D.I. Walker (2005). Iron, nitrogen, phosphorus and zinc cycling and consequences for primary productivity in the oceans. In: G.M. Gadd, K.T. Semple and H.M. Lappin-Scott (Eds.) SGM Symposium 65: Micro-organisms and Earth systems - advances in geomicrobiology. Cambridge University Press. pp 247-272.

Ridgway K.R. and S. A. Condie (2004). The 5500-km long boundary flow off western and southern Australia, J. Geophys. Res. (Oceans) 109: C04017.

Shears, N.T., R.V. Grace, N.R. Usmar, V. Kerr and R.C. Babcock (2006) Long-term trends in lobster populations in a partially protected vs. no-take marine park. Biological Conservation 132: 222-231.

Shepherd, S.A. (2005). Ontogenetic changes in diet, feeding behaviour and activity of the western blue groper, Achoerodus gouldii. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 477-494.

Soetaert, K., A.F. Hofmann, J.J. Middelburg and J. Greenwood (2007). The effect of biogeochemical processes on pH. Marine Chemistry 105: 30-51.

Stevens, J.D. (2007). Whale shark (Rhincodon typus) biology and ecology: a review of the primary literature. In: T.R. Irvine and J.K. Keesing (Eds.) Whale Sharks: Science, Conservation and Management. Proceedings of the First International Whale Shark Conference, 9-12 May 2005 Australia. Fisheries Research 84(1): 4-9.

Strzelecki, J., J. A. Koslow and A.A. Waite (2007). Comparison of mesozooplankton communities of a paired warm and cold core eddy off the coast of Western Australia. Deep-Sea Research II 54(8-10): 1103-1112.

Symonds, G. (2006) Ningaloo Start-up Projects 2005-06 Financial Year: Activity C: Physical Oceanography. CSIRO Marine and Atmospheric Research Unpublished Report.

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Taylor, J.D., E.A. Glover and S.T. Williams. (2005) Another bloody bivalve: anatomy and relationships of Eucrassatella donacina from southwestern Australia (Mollusca: Bivalvia: Crassatellidae). In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 261-288.

Thompson, P. A., S. Pesant and A. M. Waite (2007) Contrasting the vertical differences in the phytoplankton biology of a warm core versus cold core eddy in the south-eastern Indian Ocean. Deep-Sea Research II 54(8-10): 1003-1028.

Toohey B.D., G.A. Kendrick, T. Wernberg, J.C. Phillips, S. Malkin and J. Prince (2004). The effect of light and thallus scour from Ecklonia radiata canopy on an associated foliose algal assemblage: the importance of photoacclimation. Marine Biology 144 (5): 1019-1027.

Twomey, L., A.M. Waite, V. Pez and C. Pattiaratchi (2007). Variability in nitrogen uptake and fixation in the oligotrophic waters off the south west coast of Australia. Deep Sea Research II 54: 925-942.

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Valentine, J.F., K.L. Heck Jr, D. Blackmon, M.E. Goecker, J. Christian, R.M. Kroutil, K.D. Kirsch, B.J. Peterson, M. Beck and M.A. Vanderklift (2007). Food web interactions along seagrass-coral reef boundaries: effects of piscivore reductions on cross-habitat energy exchange. Marine Ecology Progress Series 333: 37-50.

Vanderklift, M.A. and T. Wernberg. (2008) Detached kelps from distant sources are a food subsidy for sea urchins. Oecologia. 157: 327-335.

Vanderklift, M.A., J. How, T. Wernberg, K.L. Heck Jr, and J.F. Valentine (2007). Proximity to reef influences the density of small predatory fishes, while type of seagrass influences intensity of predation on crabs. Marine Ecology Progress Series 340: 235-243.

Vanderklift, M. A., and G. A. Kendrick (2004). Variation in abundances of herbivorous invertebrates in temperate subtidal rocky reef habitats. Marine and Freshwater Research 55: pp 93-103.

Vanderklift, M. A. and G.A. Kendrick (2005). Contrasting influence of sea urchins on attached and drift macroalgae. Marine Ecology Progress Series. 299: 101-110.

Vanderklift, M. A., G.A. Kendrick and A.J. Smit (2006). Differences in trophic position among sympatric sea urchin species. Estuarine, Coastal and Shelf Science 66: 291-297.

Vanderklift, M.A., P.S. Lavery and K.I. Waddington (in press). Intensity of herbivory on kelp by fish and sea urchins varies between inshore and offshore reefs. Marine Ecology Progress Series.

Verspecht, F. and C. Pattiaratchi (submitted). Diel variations in physical processes and the phytoplankton response. (Submitted to Continental Shelf Research)

Verspecht, F. and C. Pattiaratchi (submitted). The influence of suspended particulate matter on the subsurface light climate in wind-driven coastal waters. (Submitted to Estuarine, Coastal and Shelf Science).

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Waddington, K.I., L.M. Bellchambers, M.A. Vanderklift and D.I. Walker (2008). Western rock lobsters (Panulirus cygnus) in Western Australian deep coastal ecosystems (35–60 m) are more carnivorous than those in shallow coastal ecosystems. Estuarine and Coastal Marine Science 79: 114-120.

Waite, A.M., P.A. Thompson, L.E. Beckley and M. Feng (submitted). The Leeuwin Current and its Eddies. Deep-Sea Research Special Issue. (Resubmitted after review)

Waite, A.M., P.A. Thompson, S. Pesant, M. Feng, L.E. Beckley, C. Domingues, D. Gaughan, C. Hanson, C. Holl, J.A. Koslow, M. Meuleners, J. Montoya, T. Moore, B.A. Muhling, H. Paterson, S. Rennie, J. Strzelecki and L. Twomey (2007). The Leeuwin Current and its Eddies: An Introductory Overview. Deep Sea Research II 54(8-10): 789-796.

Waite, A., B. Muhling, C. Holl, L. Beckley, J. Montoya, J. Strzelecki, P. Thompson, S. Pesant (2007). Food web structure in two counter-rotating eddies based on δ15N and δ13C isotopic analyses. Deep-Sea Research II 54(8-10): 1055-1075.

Waite, A. M., S. Pesant, D. A. Griffin, P. A. Thompson and C. M. Holl. (2007). Oceanography, primary production and dissolved inorganic nitrogen uptake in two Leeuwin Current eddies. Deep-Sea Research II 54(8-10): 981-1002.

Watson, J.E. (2005). Hydroids of the Archipelago of the Recherche and Esperance, Western Australia: Annotated List, redescription of species, and description of new species. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 495-611.

Wells, F.E. and J.K. Keesing (2005). Feeding of Lepsiella flindersi (Adams and Angas, 1863) on the limpet Patelloida alticostata (Angas, 1865), near Esperance, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 315-323.

Wells, F.E., A.F. Longbottom and J. Longbottom (2005). The marine molluscs of Esperance Bay and the Recherche Archipelago, Western Australia. In: F.E. Wells, D.I. Walker and G.A. Kendrick (eds.) The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. p. 289-313.

Wells, F.E., D.I. Walker and G.A. Kendrick (eds.) (2005). The Marine Flora and Fauna of Esperance, Western Australia. Western Australian Museum, Perth. 727 pp.

Wernberg T., G.A. Kendrick and J.C. Phillips (2003). Regional differences in kelp-associated algal assemblages on temperate limestone reefs in south-western Australia. Diversity & Distributions
9:427-441.

Wernberg, T., M. White and M.A. Vanderklift. (2008) Population structure of turbinid gastropods on wave-exposed subtidal reefs: effects of density, body size and algae on grazing behaviour. Marine Ecology Progress Series. 362: 169-179.

Wernberg, T., M.A. Vanderklift, P.S. Lavery and J. How (2006). Export of detached macroalgae from reefs to adjacent seagrass beds. Oecologia 147: 692-701.

Westera, M., R.C. Babcock and P. Fearns (2005) Post-dredging recovery of seagrass in the Geraldton region. Year 1 Report June 2005. A Report to the Geraldton Port Authority. CSIRO Marine and
Atmospheric Research. 128 pp. Unpublished Report.

Westera, M., R. Babcock and P. Fearns (2006). Post-dredging recovery of seagreass in the Geraldton region. Year 2 Report June 2006. A Report to the Geraldton Port Authority CSIRO Marine and
Atmospheric Research. 47 pp. Unpublished Report.

Westera, M.B., G.T. Coupland, J.C. Phillips, A.J. Grochowski and E.S. Harvey (in press). The marine environment of the Capes region (Western Australia) and the influence of the Leeuwin Current on diversity and distribution of fishes and algae. Journal of the Royal Society of Western Australia.

Wildsmith, M.D., I.C. Potter, F.J. Valesini and M.E. Platell (2005). Do the assemblages of benthic macroinvertebrates in nearshore waters of Western Australia vary among habitat types, zones and seasons? Journal of the Marine Biological Association of the United Kingdom 85(4787): 1-16.

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